PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05206g03015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 293aa    MW: 32873.6 Da    PI: 10.1941
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05206g03015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.41.5e-3874133261
                    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                               +e++lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+
  Niben101Scf05206g03015.1  74 PETILKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKR 133
                               67899***************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3362132IPR003851Zinc finger, Dof-type
PfamPF027012.8E-3277132IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.37678132IPR003851Zinc finger, Dof-type
PROSITE patternPS01361080116IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAFSSIPIYL DPPNWQHEQG NHQQQLGVAN ENPSQLSPVM PPPPAVRGGG GGPTGSVRPG  60
SMVERARLAK VTQPETILKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN  120
VPVGGGCRRN NKRGTKRSRS KSPTRGEKRN CPIITSANAT TSNNSIHHLP HPTHLSFLST  180
PNLHNFSDFT STENSLNFGG SQPQGGTRNQ MEDQARFIDQ FRFQQMQQFP FFSNLDQQQP  240
SNYLYQFEAA AEYNVGEVAN VKVEKNKGTN SEGINLPRNN LGVTNNQFWT NFH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772448.11e-174PREDICTED: dof zinc finger protein DOF3.6-like
RefseqXP_016491280.11e-174PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLM1C5E89e-95M1C5E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602163e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-49OBF-binding protein 3